![]() Academic Reading? There’s an AI for that.Exploring the Observed Antibody Space (OAS).Machine learning strategies to overcome limited data availability.9th Joint Sheffield Conference on Cheminformatics.Post navigation ← Naga101: A Guide to Getting Started with (OPIG) Slurm Servers How to turn a SMILES string into an extended-connectivity fingerprint using RDKit → ![]() This entry was posted in Bash, Code, Hints and Tips, How To, Linux & GNU/Linux, macOS, OS, Windows and tagged command-line, fuzzy, FZF, notes, ripgrep, search, vim on Novemby Magnus Haraldson Høie. (And lastly – a short list of related tools you may want to check out) Good luck, and may your second brain grow limited by no bounds! Just try to mark your entries with memorable patterns such as _biopython how to read FASTA files_, and you’ll find them in seconds – regardless of where they’re located. You can have as many files and directories as you wish. Obsidian, Roam), or a collection of code/project files you want available at your fingertips. For example, you may point Fuz to a directory where you keep text notes (e.g. zshrc file, pointing Fuz to a specific directory (see example in the gif above). The -setup flag adds a few handy aliases to your ~/.bashrc or ~/. ![]() fuz -open: Open file using the system default application.fuz -path: Search a specific directory.fuz: Search text in current directory, (3) levels down.It can be immensely useful for finding text across a code-base, or every mention of something across all your projects. Here is how to install and use Fuz, from # Download and install FuzĬonda install -c conda-forge fzf ripgrep batīy default, Fuz searches the current directory up to 3 levels down, but this can be modified to any depth. Python code (using bat), and it’s clever enough to ignore binary, hidden and. Files are searched from memory when available, there is syntax highlighting for markdown and e.g. rules and automatically skip hidden files/directories and binary files. There are also a few other convenient features. ripgrep recursively searches directories for a regex pattern while. Here, on how to read FASTA files with Biopython, conveniently added to a file called biopython.py. Using Fuz to quickly add a code-snippet in our note directory – then retrieving it with fuzzy-search. And it’s FAST – 100,000 lines in half a second fast. Files are opened at the exact line you found. As you type, the search results get narrowed down to a few matches. This is how I have used Fuz, a terminal-based file fuzzy finder, for about 4 years.īriefly, Fuz extracts all text within a directory using ripgrep, enables interactive fuzzy search with FZF, and returns you the selected item. The benefits of such a note system are immense – never forget anything again! Search, perform the magic ritual of Copy Paste, and rejoice in the wisdom of your tried and tested past.īut how? Through the unreasonable effectiveness of interactive fuzzy search. Searching should be exhaustive – if it’s there, you must find it.Adding information should be frictionless.A good note system should act like a second brain:
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